Installing Different Bioinformatics Alignment Tools in Command Line

Installing different Sequence Alignment tools in bioinformatics that are used for aligning sequences from protein to DNA using Command-line Interface.

Preparing system

Open a terminal in your operating System. Update and upgrade your system using the following commands:

• $ sudo apt-get update

• $ sudo apt-get upgrade

Install alignment Tools using the Commands given below

• MUSCLE

  $ sudo apt-get install -y muscle

• MAFFT

  $ sudo apt-get install -y mafft

• Clustal Omega

  $ sudo apt-get install -y clustalo

• ClustalW

  $ sudo apt-get install -y clustalw

• ClustalX

  $ sudo apt-get install -y clustalx

• Dialign

  $ sudo apt-get install -y dialign

• MUMmer

  $ sudo apt-get install -y mummer

• NCBI-BLAST+

  $ sudo apt-get install -y ncbi-blast+

• EMBOSS

  $ sudo apt-get install -y emboss
  
  $ sudo apt-get install -y emboss-lib

• HMMER

  $ sudo apt-get install -y hmmer

• JAligner

  $ sudo apt-get install -y jaligner

These are a few commonly used alignment programs that can be easily installed from the repository in Ubuntu.