Installing Different Bioinformatics Alignment Tools in Command Line

Installing Different Bioinformatics Alignment Tools in Command Line

August 11, 2022 by Abdul Rehman0
Installing different Sequence Alignment tools in bioinformatics that are used for aligning sequences from protein to DNA using Command-line Interface.

Preparing system

Open a terminal in your operating System. Update and upgrade your system using the following commands:

  • $ sudo apt-get update
  • $ sudo apt-get upgrade

Install alignment Tools using the Commands given below

    $ sudo apt-get install -y muscle
    $ sudo apt-get install -y mafft
  • Clustal Omega
    $ sudo apt-get install -y clustalo
  • ClustalW
    $ sudo apt-get install -y clustalw
  • ClustalX
    $ sudo apt-get install -y clustalx
  • Dialign
    $ sudo apt-get install -y dialign
  • MUMmer
    $ sudo apt-get install -y mummer
    $ sudo apt-get install -y ncbi-blast+
    $ sudo apt-get install -y emboss
    $ sudo apt-get install -y emboss-lib
    $ sudo apt-get install -y hmmer
  • JAligner
    $ sudo apt-get install -y jaligner

These are a few commonly used alignment programs that can be easily installed from the repository in Ubuntu.

Green Leaves Welcome to a New School Year Google Classroom Header (2)


Leave a Reply

Your email address will not be published. Required fields are marked *



24/7 Services

Call us now if you are in a need, we will reply swiftly and provide you with our services.

Copyright 2022